Scalable Computational Bioinformatics

4 Credits.

Introduces the computational hardware and programming model upon which analysis tools and languages are based. Introduces and uses three main languages (Python, Perl, SQL) and their underlying rationale to develop computer science concepts such as data structures, algorithms, computational complexity, regular expressions, and knowledge representation. Draws examples and exercises from high-throughput sequence analysis, proteomics and modeling of biological systems. Reinforces key concepts through lectures with live computer demonstrations, weekly readings, and programming exercises. Has students working with a High Performance Compute Cluster and the Amazon cloud.